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LOC102362094 very-long-chain 3-oxoacyl-CoA reductase-A [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102362094, updated on 26-Apr-2024

Summary

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Gene symbol
LOC102362094
Gene description
very-long-chain 3-oxoacyl-CoA reductase-A
See related
Ensembl:ENSLACG00000016989
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Also known as
HSD17B12
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Genomic context

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See LOC102362094 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 17 NC_088155.1 (2829178..2937333)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819017.1 (1845847..1954570)

Chromosome 17 - NC_088155.1Genomic Context describing neighboring genes Neighboring gene apoptosis inhibitor 5 Neighboring gene tetratricopeptide repeat domain 17 Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene uncharacterized LOC135360326 Neighboring gene uncharacterized protein C11orf96 homolog Neighboring gene alkB homolog 3, alpha-ketoglutarate dependent dioxygenase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
very-long-chain 3-oxoacyl-CoA reductase-A
Names
hydroxysteroid 17-beta dehydrogenase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088155.1 Reference fLatCha1.pri

    Range
    2829178..2937333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005986908.3 → XP_005986970.1  very-long-chain 3-oxoacyl-CoA reductase-A

    UniProtKB/TrEMBL
    H3BBP3
    Related
    ENSLACP00000019314.2
    Conserved Domains (2) summary
    cd05356
    Location:55 → 295
    17beta-HSD1_like_SDR_c; 17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs
    COG0300
    Location:51 → 305
    DltE; Short-chain dehydrogenase [General function prediction only]
Nucleotide Protein
Heading Accession and Version

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