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B3GALNT2 beta-1,3-N-acetylgalactosaminyltransferase 2 [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102359133, updated on 10-Oct-2024

Summary

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Gene symbol
B3GALNT2
Gene description
beta-1,3-N-acetylgalactosaminyltransferase 2
See related
Ensembl:ENSLACG00000013209
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Orthologs
human zebrafish all
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Genomic context

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See B3GALNT2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 3 NC_088141.1 (104778712..104841846, complement)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819170.1 (824477..886904, complement)

Chromosome 3 - NC_088141.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 3A24-like Neighboring gene geranylgeranyl diphosphate synthase 1 Neighboring gene tubulin folding cofactor E Neighboring gene RNA binding motif protein 34 Neighboring gene actin alpha 1, skeletal muscle

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088141.1 Reference fLatCha1.pri

    Range
    104778712..104841846 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005993336.3 → XP_005993398.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2 isoform X5

    UniProtKB/TrEMBL
    H3AZD8
    Related
    ENSLACP00000015009.1
    Conserved Domains (1) summary
    cl21608
    Location:243 → 377
    Galactosyl_T; Galactosyltransferase

  2. XM_005993335.3 → XP_005993397.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    H3AZD8
    Conserved Domains (1) summary
    cl21608
    Location:319 → 453
    Galactosyl_T; Galactosyltransferase

  3. XM_064555882.1 → XP_064411952.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2 isoform X3

  4. XM_014486851.2 → XP_014342337.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    H3AZD8

  5. XM_014486852.2 → XP_014342338.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2 isoform X4

Nucleotide Protein
Heading Accession and Version

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