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CHST3A carbohydrate (chondroitin 6) sulfotransferase 3a [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102357620, updated on 2-May-2024

Summary

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Gene symbol
CHST3A
Gene description
carbohydrate (chondroitin 6) sulfotransferase 3a
See related
Ensembl:ENSLACG00000013983
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Also known as
CHST3
Orthologs
human zebrafish all
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Genomic context

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See CHST3A in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 8 NC_088146.1 (88806686..88941785, complement)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819306.1 (843481..987461)

Chromosome 8 - NC_088146.1Genomic Context describing neighboring genes Neighboring gene core histone macro-H2A.2 Neighboring gene uncharacterized LOC135358697 Neighboring gene AIF family member 2 Neighboring gene E3 SUMO-protein ligase ZBED1-like Neighboring gene prosaposin Neighboring gene cadherin-related 23

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chondroitin 6-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 3a
Names
carbohydrate (chondroitin 6) sulfotransferase 3
carbohydrate sulfotransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088146.1 Reference fLatCha1.pri

    Range
    88806686..88941785 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014488452.2 → XP_014343938.1  carbohydrate sulfotransferase 3a

    UniProtKB/TrEMBL
    H3B1V8

RNA

  1. XR_001353501.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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