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LOC102357208 glucosaminyl (N-acetyl) transferase 1 [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102357208, updated on 26-Apr-2024

Summary

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Gene symbol
LOC102357208
Gene description
glucosaminyl (N-acetyl) transferase 1
See related
Ensembl:ENSLACG00000006871
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Also known as
GCNT1
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Genomic context

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See LOC102357208 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 1 NC_088139.1 (88154181..88156361)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005820964.1 (144114..243281)

Chromosome 1 - NC_088139.1Genomic Context describing neighboring genes Neighboring gene general transcription factor II-I repeat domain-containing protein 2-like Neighboring gene uncharacterized LOC135360017 Neighboring gene uncharacterized LOC102359943 Neighboring gene protein prune homolog 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase
Names
glucosaminyl (N-acetyl) transferase 1, core 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088139.1 Reference fLatCha1.pri

    Range
    88154181..88156361
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006009102.3 → XP_006009164.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase

    UniProtKB/TrEMBL
    H3ADN6
    Related
    ENSLACP00000007757.1
    Conserved Domains (1) summary
    pfam02485
    Location:121 → 389
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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