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POMT2 protein-O-mannosyltransferase 2 [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102356244, updated on 29-Apr-2024

Summary

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Gene symbol
POMT2
Gene description
protein-O-mannosyltransferase 2
See related
Ensembl:ENSLACG00000013442
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Orthologs
human zebrafish all
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Genomic context

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See POMT2 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 11 NC_088149.1 (25515988..25573872)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819014.1 (857487..913324, complement)

Chromosome 11 - NC_088149.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102357299 Neighboring gene glutathione S-transferase zeta 1 Neighboring gene neuroglobin Neighboring gene transmembrane protein 63C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088149.1 Reference fLatCha1.pri

    Range
    25515988..25573872
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005986528.3 → XP_005986590.1  protein O-mannosyl-transferase 2

    UniProtKB/TrEMBL
    H3B050
    Related
    ENSLACP00000015271.1
    Conserved Domains (4) summary
    smart00472
    Location:509 → 558
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    COG1928
    Location:107 → 786
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
    pfam02366
    Location:107 → 345
    PMT; Dolichyl-phosphate-mannose-protein mannosyltransferase
    pfam16192
    Location:575 → 784
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase
Nucleotide Protein
Heading Accession and Version

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