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SMPDL3A sphingomyelin phosphodiesterase acid like 3A [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102353440, updated on 2-May-2024

Summary

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Gene symbol
SMPDL3A
Gene description
sphingomyelin phosphodiesterase acid like 3A
See related
Ensembl:ENSLACG00000008692
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Orthologs
human zebrafish all
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Genomic context

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See SMPDL3A in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 3 NC_088141.1 (170811781..170876167, complement)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819075.1 (363369..429306)

Chromosome 3 - NC_088141.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102354391 Neighboring gene triadin Neighboring gene clavesin 2 Neighboring gene fatty acid binding protein 7, brain, b Neighboring gene serine incorporator 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acid sphingomyelinase-like phosphodiesterase 3a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088141.1 Reference fLatCha1.pri

    Range
    170811781..170876167 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005990449.3 → XP_005990511.1  acid sphingomyelinase-like phosphodiesterase 3a isoform X1

    UniProtKB/TrEMBL
    H3AJN6
    Related
    ENSLACP00000009857.2
    Conserved Domains (2) summary
    cd00842
    Location:39 → 338
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
    pfam00149
    Location:75 → 299
    Metallophos; Calcineurin-like phosphoesterase

  2. XM_005990450.3 → XP_005990512.1  acid sphingomyelinase-like phosphodiesterase 3a isoform X2

    Conserved Domains (2) summary
    COG1409
    Location:2 → 209
    CpdA; 3',5'-cyclic AMP phosphodiesterase CpdA [Signal transduction mechanisms]
    cd00842
    Location:1 → 208
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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