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LOC102351272 torsin-1A-interacting protein 2 [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102351272, updated on 26-Apr-2024

Summary

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Gene symbol
LOC102351272
Gene description
torsin-1A-interacting protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
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Genomic context

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See LOC102351272 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 6 NC_088144.1 (103043105..103076159, complement)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005820935.1 (152856..184352)

Chromosome 6 - NC_088144.1Genomic Context describing neighboring genes Neighboring gene kinectin-like Neighboring gene LIM homeobox 4 Neighboring gene acyl-CoA binding domain containing 6 Neighboring gene 5S ribosomal RNA Neighboring gene alpha-2-macroglobulin Neighboring gene 5S ribosomal RNA Neighboring gene SH3 and multiple ankyrin repeat domains 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088144.1 Reference fLatCha1.pri

    Range
    103043105..103076159 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006008996.3 → XP_006009058.1  torsin-1A-interacting protein 2 isoform X2

    Conserved Domains (1) summary
    pfam05609
    Location:288 → 548
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_006008995.3 → XP_006009057.1  torsin-1A-interacting protein 2 isoform X1

    Conserved Domains (1) summary
    pfam05609
    Location:290 → 550
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein
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