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LOC102350955 sphingosine kinase 1 [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102350955, updated on 12-Sep-2024

Summary

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Gene symbol
LOC102350955
Gene description
sphingosine kinase 1
See related
Ensembl:ENSLACG00000015952
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Also known as
SPHK1
Orthologs
zebrafish all
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Genomic context

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See LOC102350955 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 18 NC_088156.1 (20827723..20872558)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819166.1 (1408251..1453358, complement)

Chromosome 18 - NC_088156.1Genomic Context describing neighboring genes Neighboring gene phosphoribosyl pyrophosphate synthase-associated protein 1 Neighboring gene trichohyalin Neighboring gene ubiquitin conjugating enzyme E2 O Neighboring gene arylalkylamine N-acetyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-erythro-sphingosine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to growth factor stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine kinase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088156.1 Reference fLatCha1.pri

    Range
    20827723..20872558
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005993214.3 → XP_005993276.1  sphingosine kinase 1

    UniProtKB/TrEMBL
    H3B884
    Related
    ENSLACP00000018105.1
    Conserved Domains (2) summary
    COG1597
    Location:156 → 548
    LCB5; Diacylglycerol kinase family enzyme [Lipid transport and metabolism, General function prediction only]
    pfam00781
    Location:156 → 295
    DAGK_cat; Diacylglycerol kinase catalytic domain
Nucleotide Protein
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