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LOC102350226 acyl-CoA (8-3)-desaturase [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102350226, updated on 26-Apr-2024

Summary

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Gene symbol
LOC102350226
Gene description
acyl-CoA (8-3)-desaturase
See related
Ensembl:ENSLACG00000016910
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Also known as
FADS1
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Genomic context

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See LOC102350226 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 17 NC_088155.1 (28837607..28881699)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819029.1 (1805288..1850276, complement)

Chromosome 17 - NC_088155.1Genomic Context describing neighboring genes Neighboring gene eosinophil peroxidase Neighboring gene fatty acid desaturase 2 Neighboring gene uncharacterized LOC135360308 Neighboring gene uncharacterized LOC135360309

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acyl-CoA (8-3)-desaturase
Names
fatty acid desaturase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088155.1 Reference fLatCha1.pri

    Range
    28837607..28881699
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005987973.3 → XP_005988035.1  acyl-CoA (8-3)-desaturase

    UniProtKB/TrEMBL
    H3BBF5
    Related
    ENSLACP00000019226.2
    Conserved Domains (3) summary
    PLN03199
    Location:4 → 437
    PLN03199; delta6-acyl-lipid desaturase-like protein; Provisional
    cd03506
    Location:159 → 410
    Delta6-FADS-like; The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases ...
    pfam00173
    Location:18 → 91
    Cyt-b5; Cytochrome b5-like Heme/Steroid binding domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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