U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

POC1BL POC1 centriolar protein homolog B (Chlamydomonas), like [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102348504, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
POC1BL
Gene description
POC1 centriolar protein homolog B (Chlamydomonas), like
See related
Ensembl:ENSLACG00000001612
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Also known as
GALNT4
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See POC1BL in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 2 NC_088140.1 (161901107..161984411, complement)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819556.1 (25242..106769, complement)

Chromosome 2 - NC_088140.1Genomic Context describing neighboring genes Neighboring gene gamma-aminobutyric acid (GABA) B receptor, 2 Neighboring gene uncharacterized LOC102354264 Neighboring gene 5S ribosomal RNA Neighboring gene UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 Neighboring gene ubiquitin carboxyl-terminal hydrolase 33-like Neighboring gene ubiquitin carboxyl-terminal hydrolase 33-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polypeptide N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
polypeptide N-acetylgalactosaminyltransferase 4
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088140.1 Reference fLatCha1.pri

    Range
    161901107..161984411 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005999729.3 → XP_005999791.1  polypeptide N-acetylgalactosaminyltransferase 4

    UniProtKB/TrEMBL
    H2ZWN5
    Related
    ENSLACP00000001806.1
    Conserved Domains (4) summary
    cd02510
    Location:142 → 436
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    COG0463
    Location:138 → 332
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cd00161
    Location:450 → 580
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:450 → 578
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.