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LDHD lactate dehydrogenase D [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102348425, updated on 26-Apr-2024

Summary

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Gene symbol
LDHD
Gene description
lactate dehydrogenase D
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Orthologs
human zebrafish all
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Genomic context

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See LDHD in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 5 NC_088143.1 (27062874..27096922, complement)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819772.1 (82474..117286)

Chromosome 5 - NC_088143.1Genomic Context describing neighboring genes Neighboring gene piezo type mechanosensitive ion channel component 1 (Er blood group) Neighboring gene 5S ribosomal RNA Neighboring gene zinc and ring finger 1 Neighboring gene Golgi-associated kinase 1A-like Neighboring gene SNF related kinase b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-lactate dehydrogenase (cytochrome) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables D-lactate dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables FAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lactate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable D-lactate dehydrogenase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088143.1 Reference fLatCha1.pri

    Range
    27062874..27096922 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064558418.1 → XP_064414488.1  probable D-lactate dehydrogenase, mitochondrial isoform X1

  2. XM_064558420.1 → XP_064414490.1  probable D-lactate dehydrogenase, mitochondrial isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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