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LY75 lymphocyte antigen 75 [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102348300, updated on 2-May-2024

Summary

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Gene symbol
LY75
Gene description
lymphocyte antigen 75
See related
Ensembl:ENSLACG00000003353
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Orthologs
human zebrafish all
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Genomic context

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See LY75 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
35
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 9 NC_088147.1 (64006789..64134167)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005821569.1 (80250..207775)

Chromosome 9 - NC_088147.1Genomic Context describing neighboring genes Neighboring gene RNA-binding motif, single-stranded-interacting protein 1 Neighboring gene integrin, beta 6 Neighboring gene CD302 molecule Neighboring gene membrane-associated ring finger (C3HC4) 7 Neighboring gene bromodomain adjacent to zinc finger domain, 2Ba Neighboring gene uncharacterized LOC135359036

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lymphocyte antigen 75

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088147.1 Reference fLatCha1.pri

    Range
    64006789..64134167
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006011025.3 → XP_006011087.1  lymphocyte antigen 75

    UniProtKB/TrEMBL
    H3A292, H3A293
    Related
    ENSLACP00000003763.1
    Conserved Domains (5) summary
    smart00059
    Location:157 → 205
    FN2; Fibronectin type 2 domain
    cd00037
    Location:224 → 339
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    smart00034
    Location:359 → 483
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    smart00458
    Location:34 → 130
    RICIN; Ricin-type beta-trefoil
    cd00161
    Location:32 → 132
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein
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