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LOC102348178 glycogenin-1 [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102348178, updated on 6-Jun-2024

Summary

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Gene symbol
LOC102348178
Gene description
glycogenin-1
See related
Ensembl:ENSLACG00000007155
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Also known as
GYG1
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Genomic context

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See LOC102348178 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 8 NC_088146.1 (27580037..27617424, complement)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005820646.1 (259607..296857)

Chromosome 8 - NC_088146.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 145-like Neighboring gene uncharacterized LOC106705765 Neighboring gene helicase-like transcription factor Neighboring gene carboxypeptidase B1 (tissue) Neighboring gene type-1 angiotensin II receptor Neighboring gene uncharacterized LOC102347469

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycogenin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088146.1 Reference fLatCha1.pri

    Range
    27580037..27617424 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064562337.1 → XP_064418407.1  glycogenin-1 isoform X2

    UniProtKB/TrEMBL
    H3AEL2

  2. XM_014495709.2 → XP_014351195.1  glycogenin-1 isoform X3

  3. XM_014495710.2 → XP_014351196.1  glycogenin-1 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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