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CHPF2 chondroitin polymerizing factor 2 [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102348174, updated on 30-Apr-2024

Summary

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Gene symbol
CHPF2
Gene description
chondroitin polymerizing factor 2
See related
Ensembl:ENSLACG00000003341
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Orthologs
human zebrafish all
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Genomic context

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See CHPF2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 2 NC_088140.1 (25870539..25922456, complement)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005820438.1 (80006..131815, complement)

Chromosome 2 - NC_088140.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106706817 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit D3b Neighboring gene ATP-binding cassette sub-family F member 2 Neighboring gene Fas apoptotic inhibitory molecule 2a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate glucuronyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088140.1 Reference fLatCha1.pri

    Range
    25870539..25922456 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006006893.3 → XP_006006955.1  chondroitin sulfate glucuronyltransferase

    UniProtKB/TrEMBL
    H3A279
    Related
    ENSLACP00000003750.1
    Conserved Domains (2) summary
    pfam05679
    Location:248 → 747
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:172 → 284
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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