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PIGS phosphatidylinositol glycan anchor biosynthesis, class S [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102347200, updated on 30-Apr-2024

Summary

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Gene symbol
PIGS
Gene description
phosphatidylinositol glycan anchor biosynthesis, class S
See related
Ensembl:ENSLACG00000009203
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Orthologs
human zebrafish all
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Genomic context

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See PIGS in Genome Data Viewer
Location:
chromosome: 23
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 23 NC_088161.1 (3945245..3964058, complement)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005820248.1 (401671..421944)

Chromosome 23 - NC_088161.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102348088 Neighboring gene unc-119 lipid binding chaperone a1 Neighboring gene aldolase C, fructose-bisphosphate, b Neighboring gene sperm associated antigen 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in attachment of GPI anchor to protein IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of GPI-anchor transamidase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI transamidase component PIG-S

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088161.1 Reference fLatCha1.pri

    Range
    3945245..3964058 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006005735.3 → XP_006005797.1  GPI transamidase component PIG-S isoform X2

    Conserved Domains (1) summary
    pfam10510
    Location:26 → 551
    PIG-S; Phosphatidylinositol-glycan biosynthesis class S protein

  2. XM_006005734.3 → XP_006005796.1  GPI transamidase component PIG-S isoform X1

    UniProtKB/TrEMBL
    H3ALC4
    Related
    ENSLACP00000010445.2
    Conserved Domains (1) summary
    pfam10510
    Location:31 → 556
    PIG-S; Phosphatidylinositol-glycan biosynthesis class S protein
Nucleotide Protein
Heading Accession and Version

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