U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC102347061 ficolin-2 [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102347061, updated on 2-May-2024

Summary

Go to the top of the page Help
Gene symbol
LOC102347061
Gene description
ficolin-2
See related
Ensembl:ENSLACG00000015555
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Also known as
FCN3
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC102347061 in Genome Data Viewer
Location:
chromosome: 27
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 27 NC_088165.1 (6519628..6536187)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819094.1 (1288288..1303617, complement)

Chromosome 27 - NC_088165.1Genomic Context describing neighboring genes Neighboring gene ficolin-1-like Neighboring gene ficolin-2-like Neighboring gene mitogen-activated protein kinase kinase kinase 5 Neighboring gene synaptotagmin-like 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables antigen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate derivative binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in complement activation, lectin pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ficolin-2
Names
ficolin 3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088165.1 Reference fLatCha1.pri

    Range
    6519628..6536187
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005991028.3 → XP_005991090.1  ficolin-2 isoform X1

    UniProtKB/TrEMBL
    H3B6Y7
    Related
    ENSLACP00000017658.1
    Conserved Domains (1) summary
    cd00087
    Location:106 → 316
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...

  2. XM_005991029.3 → XP_005991091.1  ficolin-2 isoform X2

    UniProtKB/TrEMBL
    H3B6Y7
    Conserved Domains (1) summary
    cd00087
    Location:98 → 308
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.