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SDC2 syndecan 2 [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102346562, updated on 12-Sep-2024

Summary

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Gene symbol
SDC2
Gene description
syndecan 2
See related
Ensembl:ENSLACG00000009580
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Orthologs
zebrafish all
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Genomic context

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See SDC2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 2 NC_088140.1 (335555643..335781815)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005820142.1 (432420..662421, complement)

Chromosome 2 - NC_088140.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL34-like Neighboring gene kinectin-like Neighboring gene carboxypeptidase Q Neighboring gene metadherin a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088140.1 Reference fLatCha1.pri

    Range
    335555643..335781815
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006005044.3 → XP_006005106.1  syndecan-2

    UniProtKB/TrEMBL
    H3AML5
    Related
    ENSLACP00000010886.2
    Conserved Domains (1) summary
    pfam01034
    Location:146 → 207
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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