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piwil1 piwi-like RNA-mediated gene silencing 1 [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102307313, updated on 10-Mar-2024

Summary

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Gene symbol
piwil1
Gene description
piwi-like RNA-mediated gene silencing 1
See related
Ensembl:ENSHBUG00000000983
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Orthologs
human zebrafish all
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Genomic context

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See piwil1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582456.1 (1246197..1257253)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179483.1 (1243305..1251585)

NW_024582456.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 132D Neighboring gene frizzled class receptor 10 Neighboring gene RIMS binding protein 2b Neighboring gene syntaxin 2b Neighboring gene adhesion G protein-coupled receptor D1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables piRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulatory ncRNA-mediated gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
piwi-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582456.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    1246197..1257253
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042222793.1 → XP_042078727.1  piwi-like protein 1

    UniProtKB/TrEMBL
    A0A3Q2VLR6
    Conserved Domains (3) summary
    smart00949
    Location:273 → 410
    PAZ; This domain is named PAZ after the proteins Piwi Argonaut and Zwille
    cd04658
    Location:396 → 839
    Piwi_piwi-like_Euk; PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related ...
    pfam05831
    Location:44 → 102
    GAGE; GAGE protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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