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polr1a RNA polymerase I subunit A [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102298604, updated on 10-Mar-2024

Summary

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Gene symbol
polr1a
Gene description
RNA polymerase I subunit A
See related
Ensembl:ENSHBUG00000020021
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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See polr1a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582760.1 (349116..389433, complement)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179809.1 (154790..194910)

NW_024582760.1Genomic Context describing neighboring genes Neighboring gene long-chain-fatty-acid--CoA ligase 1 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 5 Neighboring gene small nucleolar RNA SNORA5 Neighboring gene pentatricopeptide repeat domain 3 Neighboring gene plastin-3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase I subunit RPA1
Names
polymerase (RNA) I polypeptide A, 194kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582760.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    349116..389433 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042212879.1 → XP_042068813.1  DNA-directed RNA polymerase I subunit RPA1

    UniProtKB/TrEMBL
    A0A3Q2W006
    Conserved Domains (3) summary
    cd02735
    Location:1180 → 1682
    RNAP_I_Rpa1_C; Largest subunit (Rpa1) of Eukaryotic RNA polymerase I (RNAP I), C-terminal domain
    PRK02597
    Location:959 → 1216
    rpoC2; DNA-directed RNA polymerase subunit beta'; Provisional
    cd01435
    Location:16 → 991
    RNAP_I_RPA1_N; Largest subunit (RPA1) of eukaryotic RNA polymerase I (RNAP I), N-terminal domain
Nucleotide Protein
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