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borcs6 BLOC-1 related complex subunit 6 [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102295098, updated on 10-Mar-2024

Summary

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Gene symbol
borcs6
Gene description
BLOC-1 related complex subunit 6
See related
Ensembl:ENSHBUG00000019059
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Orthologs
human zebrafish all
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Genomic context

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See borcs6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582421.1 (820123..830593)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179659.1 (27238..37647, complement)

NW_024582421.1Genomic Context describing neighboring genes Neighboring gene ras homolog gene family, member Ab Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3H Neighboring gene Glyco_hydro_56 domain-containing protein Neighboring gene xeroderma pigmentosum, complementation group C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in lysosome localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of BORC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BLOC-1 related complex subunit 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582421.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    820123..830593
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014338994.2 → XP_014194480.1  BLOC-1 related complex subunit 6

    UniProtKB/TrEMBL
    A0A3Q2WZT1
    Related
    ENSHBUP00000032649.1
    Conserved Domains (2) summary
    COG4547
    Location:29 → 207
    CobT2; Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphorib... [Coenzyme transport and metabolism]
    pfam10157
    Location:300 → 449
    BORCS6; BLOC-1-related complex sub-unit 6

  2. XM_014338995.2 → XP_014194481.1  BLOC-1 related complex subunit 6

    UniProtKB/TrEMBL
    A0A3Q2WZT1
    Conserved Domains (2) summary
    COG4547
    Location:29 → 207
    CobT2; Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphorib... [Coenzyme transport and metabolism]
    pfam10157
    Location:300 → 449
    BORCS6; BLOC-1-related complex sub-unit 6

  3. XM_042221044.1 → XP_042076978.1  BLOC-1 related complex subunit 6

    UniProtKB/TrEMBL
    A0A3Q2WZT1
    Conserved Domains (2) summary
    COG4547
    Location:29 → 207
    CobT2; Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphorib... [Coenzyme transport and metabolism]
    pfam10157
    Location:300 → 449
    BORCS6; BLOC-1-related complex sub-unit 6

  4. XM_014338996.2 → XP_014194482.1  BLOC-1 related complex subunit 6

    UniProtKB/TrEMBL
    A0A3Q2WZT1
    Conserved Domains (2) summary
    COG4547
    Location:29 → 207
    CobT2; Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphorib... [Coenzyme transport and metabolism]
    pfam10157
    Location:300 → 449
    BORCS6; BLOC-1-related complex sub-unit 6
Nucleotide Protein
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