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vars1 valyl-tRNA synthetase 1 [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102293562, updated on 10-Mar-2024

Summary

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Gene symbol
vars1
Gene description
valyl-tRNA synthetase 1
See related
Ensembl:ENSHBUG00000017151
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Orthologs
human zebrafish all
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Genomic context

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See vars1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582441.1 (1648035..1664843)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179469.1 (592043..608851, complement)

NW_024582441.1Genomic Context describing neighboring genes Neighboring gene zinc-binding protein A33 Neighboring gene uncharacterized LOC106632292 Neighboring gene INO80 complex subunit E Neighboring gene abhydrolase domain containing 16A, phospholipase Neighboring gene g6f-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables valine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in valyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
valine--tRNA ligase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582441.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    1648035..1664843
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005925170.2 → XP_005925232.2  valine--tRNA ligase

    UniProtKB/TrEMBL
    A0A3Q3C6S0
    Related
    ENSHBUP00000015206.1, ENSHBUT00000033692.1
    Conserved Domains (7) summary
    cd07962
    Location:944 → 1086
    Anticodon_Ia_Val; Anticodon-binding domain of valyl tRNA synthetases
    cd00817
    Location:343 → 944
    ValRS_core; catalytic core domain of valyl-tRNA synthetases
    cd10294
    Location:84 → 206
    GST_C_ValRS_N; Glutathione S-transferase C-terminal-like, alpha helical domain of vertebrate Valyl-tRNA synthetase
    COG0625
    Location:3 → 196
    GstA; Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
    PTZ00419
    Location:294 → 1276
    PTZ00419; valyl-tRNA synthetase-like protein; Provisional
    pfam10458
    Location:1208 → 1271
    Val_tRNA-synt_C; Valyl tRNA synthetase tRNA binding arm
    pfam13603
    Location:521 → 646
    tRNA-synt_1_2; Leucyl-tRNA synthetase, Domain 2
Nucleotide Protein
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