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TSPAN1 tetraspanin 1 [ Myotis brandtii (Brandt's bat) ]

Gene ID: 102257811, updated on 30-Mar-2024

Summary

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Gene symbol
TSPAN1
Gene description
tetraspanin 1
Locus tag
D623_10028982
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis brandtii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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See TSPAN1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current ASM41265v1 (GCF_000412655.1) Unplaced Scaffold NW_005360425.1 (5392673..5397222, complement)

NW_005360425.1Genomic Context describing neighboring genes Neighboring gene leucine rich adaptor protein 1 Neighboring gene uncharacterized LOC106726502 Neighboring gene protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) Neighboring gene uncharacterized LOC106726503 Neighboring gene phosphoinositide-3-kinase regulatory subunit 3 Neighboring gene microtubule associated serine/threonine kinase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005360425.1 Unplaced Scaffold Reference ASM41265v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome analysis reveals insights into physiology and longevity of the Brandt's bat Myotis brandtii. Seim I, et al. Nat Commun, 2013. PMID 23962925, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetraspanin-1
Names
Tetraspanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis brandtii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM41265v1

Genomic

  1. NW_005360425.1 Reference ASM41265v1

    Range
    5392673..5397222 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005868664.2 → XP_005868726.1  tetraspanin-1 isoform X1

    See identical proteins and their annotated locations for XP_005868726.1

    UniProtKB/TrEMBL
    S7PLY3
    Conserved Domains (2) summary
    cd03156
    Location:110 → 210
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:7 → 238
    Tetraspannin; Tetraspanin family

  2. XM_014541620.1 → XP_014397106.1  tetraspanin-1 isoform X2

    Conserved Domains (2) summary
    cd03156
    Location:110 → 183
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:7 → 187
    Tetraspannin; Tetraspanin family
Nucleotide Protein
Heading Accession and Version

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