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LOC102249479 torsin-1A-interacting protein 2 [ Myotis brandtii (Brandt's bat) ]

Gene ID: 102249479, updated on 30-Mar-2024

Summary

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Gene symbol
LOC102249479
Gene description
torsin-1A-interacting protein 2
Locus tag
D623_10022815
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis brandtii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
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Genomic context

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See LOC102249479 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current ASM41265v1 (GCF_000412655.1) Unplaced Scaffold NW_005370412.1 (2082447..2107721)

NW_005370412.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106723710 Neighboring gene torsin 1A interacting protein 1 Neighboring gene torsin-1A-interacting protein 2, isoform IFRG15 Neighboring gene uncharacterized LOC106723707 Neighboring gene family with sequence similarity 163 member A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005370412.1 Unplaced Scaffold Reference ASM41265v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome analysis reveals insights into physiology and longevity of the Brandt's bat Myotis brandtii. Seim I, et al. Nat Commun, 2013. PMID 23962925, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis brandtii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM41265v1

Genomic

  1. NW_005370412.1 Reference ASM41265v1

    Range
    2082447..2107721
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005880241.2 → XP_005880303.1  torsin-1A-interacting protein 2 isoform X1

    See identical proteins and their annotated locations for XP_005880303.1

    UniProtKB/TrEMBL
    S7Q6D3
    Conserved Domains (2) summary
    pfam05887
    Location:119 → 220
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    pfam05609
    Location:17 → 549
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_014528346.1 → XP_014383832.1  torsin-1A-interacting protein 2 isoform X1

    UniProtKB/TrEMBL
    S7Q6D3
    Conserved Domains (2) summary
    pfam05887
    Location:119 → 220
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    pfam05609
    Location:17 → 549
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  3. XM_005880242.2 → XP_005880304.1  torsin-1A-interacting protein 2 isoform X1

    See identical proteins and their annotated locations for XP_005880304.1

    UniProtKB/TrEMBL
    S7Q6D3
    Conserved Domains (2) summary
    pfam05887
    Location:119 → 220
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    pfam05609
    Location:17 → 549
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  4. XM_014528347.1 → XP_014383833.1  torsin-1A-interacting protein 2 isoform X2

    Conserved Domains (1) summary
    pfam05609
    Location:17 → 539
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein
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