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ddx10 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102237999, updated on 10-Mar-2024

Summary

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Gene symbol
ddx10
Gene description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
See related
Ensembl:ENSXMAG00000016515
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See ddx10 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 9 NC_036451.1 (851761..855772)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005373126.1 (34657..38013, complement)

Chromosome 9 - NC_036451.1Genomic Context describing neighboring genes Neighboring gene epidermal growth factor receptor substrate 15-like 1 Neighboring gene lysine (K)-specific demethylase 4A, genome duplicate a Neighboring gene SZT2 subunit of KICSTOR complex Neighboring gene abnormal spindle-like microcephaly-associated protein homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX10
Names
DEAD-box helicase 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036451.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    851761..855772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005814740.2 → XP_005814797.1  probable ATP-dependent RNA helicase DDX10

    UniProtKB/TrEMBL
    M4APZ6
    Related
    ENSXMAP00000016541.1, ENSXMAT00000016565.2
    Conserved Domains (4) summary
    smart00487
    Location:92 → 298
    DEXDc; DEAD-like helicases superfamily
    cd00079
    Location:296 → 423
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00268
    Location:79 → 283
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam13959
    Location:459 → 518
    DUF4217; Domain of unknown function (DUF4217)
Nucleotide Protein Strain
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