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LOC102237870 troponin T, slow skeletal muscle-like [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102237870, updated on 22-Oct-2023

Summary

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Gene symbol
LOC102237870
Gene description
troponin T, slow skeletal muscle-like
See related
Ensembl:ENSXMAG00000008583
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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Genomic context

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See LOC102237870 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
15
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 16 NC_036458.1 (22872604..22886794, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372262.1 (122269..132073)

Chromosome 16 - NC_036458.1Genomic Context describing neighboring genes Neighboring gene ferritin, middle subunit-like Neighboring gene synaptotagmin Va Neighboring gene PIH1 domain containing 1 Neighboring gene uncharacterized protein DDB_G0271670-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tropomyosin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables troponin T binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sarcomere organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in slow-twitch skeletal muscle fiber contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of troponin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
troponin T, slow skeletal muscle-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036458.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    22872604..22886794 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023349326.1 → XP_023205094.1  troponin T, slow skeletal muscle-like isoform X2

    UniProtKB/TrEMBL
    M4A2B3
    Related
    ENSXMAP00000031411.1, ENSXMAT00000031273.1
    Conserved Domains (1) summary
    pfam00992
    Location:77 → 212
    Troponin

  2. XM_023349325.1 → XP_023205093.1  troponin T, slow skeletal muscle-like isoform X1

    UniProtKB/TrEMBL
    M4A2B3
    Related
    ENSXMAP00000008607.2, ENSXMAT00000008620.2
    Conserved Domains (1) summary
    pfam00992
    Location:84 → 219
    Troponin
Nucleotide Protein Strain
Heading Accession and Version

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