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smg7 SMG7 nonsense mediated mRNA decay factor [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102237763, updated on 10-Mar-2024

Summary

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Gene symbol
smg7
Gene description
SMG7 nonsense mediated mRNA decay factor
See related
Ensembl:ENSXMAG00000007123
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See smg7 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
22
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 6 NC_036448.1 (29500230..29515920)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005377027.1 (6..3942, complement)

Chromosome 6 - NC_036448.1Genomic Context describing neighboring genes Neighboring gene RAS protein activator like 2 Neighboring gene E3 ubiquitin-protein ligase TRIM21-like Neighboring gene uncharacterized LOC102226095 Neighboring gene uncharacterized LOC111608915

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables telomerase RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of telomerase holoenzyme complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SMG7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036448.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    29500230..29515920
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023335278.1 → XP_023191046.1  protein SMG7 isoform X1

    Conserved Domains (3) summary
    sd00006
    Location:153 → 179
    TPR; TPR repeat [structural motif]
    pfam10373
    Location:170 → 430
    EST1_DNA_bind; Est1 DNA/RNA binding domain
    pfam10374
    Location:54 → 166
    EST1; Telomerase activating protein Est1

  2. XM_023335279.1 → XP_023191047.1  protein SMG7 isoform X2

    UniProtKB/TrEMBL
    M3ZY43
    Related
    ENSXMAP00000007137.2, ENSXMAT00000007145.2
    Conserved Domains (3) summary
    sd00006
    Location:153 → 179
    TPR; TPR repeat [structural motif]
    pfam10373
    Location:170 → 430
    EST1_DNA_bind; Est1 DNA/RNA binding domain
    pfam10374
    Location:54 → 166
    EST1; Telomerase activating protein Est1
Nucleotide Protein Strain
Heading Accession and Version

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