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ext1b exostosin glycosyltransferase 1b [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102237506, updated on 10-Mar-2024

Summary

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Gene symbol
ext1b
Gene description
exostosin glycosyltransferase 1b
See related
Ensembl:ENSXMAG00000014016
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Also known as
ext1
Orthologs
zebrafish all
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Genomic context

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See ext1b in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 13 NC_036455.1 (5855782..6004962, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372188.1 (173597..319061)

Chromosome 13 - NC_036455.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 30 member 8 Neighboring gene mediator complex subunit 30 Neighboring gene sterile alpha motif domain containing 12 Neighboring gene homeobox protein EMX1-like Neighboring gene zymogen granule membrane protein 16-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-1b
Names
exostosin glycosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036455.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    5855782..6004962 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005796412.2 → XP_005796469.1  exostosin-1b

    UniProtKB/TrEMBL
    M4AHV7
    Related
    ENSXMAP00000014051.1, ENSXMAT00000014070.2
    Conserved Domains (2) summary
    pfam03016
    Location:104 → 390
    Exostosin; Exostosin family
    pfam09258
    Location:474 → 715
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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