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st3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102237457, updated on 10-Mar-2024

Summary

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Gene symbol
st3gal4
Gene description
ST3 beta-galactoside alpha-2,3-sialyltransferase 4
See related
Ensembl:ENSXMAG00000021951
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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See st3gal4 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
11
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 18 NC_036460.1 (13896733..13924900)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372418.1 (509268..528473, complement)

Chromosome 18 - NC_036460.1Genomic Context describing neighboring genes Neighboring gene SRP receptor subunit alpha Neighboring gene toll-interleukin 1 receptor (TIR) domain containing adaptor protein Neighboring gene potassium inwardly rectifying channel subfamily J member 5 Neighboring gene potassium inwardly rectifying channel subfamily J member 1a, tandem duplicate 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036460.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    13896733..13924900
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014472457.2 → XP_014327943.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A3B5REZ9
    Related
    ENSXMAP00000040656.1, ENSXMAT00000036231.1
    Conserved Domains (1) summary
    pfam00777
    Location:71 → 336
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_023351517.1 → XP_023207285.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X2

    Conserved Domains (1) summary
    pfam00777
    Location:105 → 319
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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