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dhx16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102235903, updated on 10-Mar-2024

Summary

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Gene symbol
dhx16
Gene description
DEAH (Asp-Glu-Ala-His) box polypeptide 16
See related
Ensembl:ENSXMAG00000013293
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See dhx16 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
22
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 3 NC_036445.1 (12746600..12761049, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372246.1 (304088..320433)

Chromosome 3 - NC_036445.1Genomic Context describing neighboring genes Neighboring gene alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase a Neighboring gene ring finger protein 183 Neighboring gene lysosomal thioesterase PPT2-A-like Neighboring gene uncharacterized LOC111608126

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
Names
DEAH-box helicase 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036445.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    12746600..12761049 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023330908.1 → XP_023186676.1  putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X2

    UniProtKB/TrEMBL
    M4AFU2
    Conserved Domains (2) summary
    COG1643
    Location:373 → 1023
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cl26511
    Location:61 → 408
    Neuromodulin_N; Gap junction protein N-terminal region

  2. XM_023330907.1 → XP_023186675.1  putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1

    UniProtKB/TrEMBL
    M4AFU2
    Related
    ENSXMAP00000013336.2, ENSXMAT00000013352.2
    Conserved Domains (2) summary
    COG1643
    Location:373 → 1023
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cl26511
    Location:61 → 408
    Neuromodulin_N; Gap junction protein N-terminal region
Nucleotide Protein Strain
Heading Accession and Version

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