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LOC102235410 beta-1,4-galactosyltransferase 1-like [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102235410, updated on 22-Oct-2023

Summary

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Gene symbol
LOC102235410
Gene description
beta-1,4-galactosyltransferase 1-like
See related
Ensembl:ENSXMAG00000023762
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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Genomic context

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See LOC102235410 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
3
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 21 NC_036463.1 (14981680..14985161)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372270.1 (1179751..1182997)

Chromosome 21 - NC_036463.1Genomic Context describing neighboring genes Neighboring gene peroxisomal biogenesis factor 2 Neighboring gene zinc finger homeobox 4 Neighboring gene APC membrane recruitment protein 2 Neighboring gene myotubularin related protein 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytoskeletal protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-galactosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036463.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    14981680..14985161
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023326548.1 → XP_023182316.1  beta-1,4-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A3B5Q277
    Conserved Domains (1) summary
    cd00899
    Location:125 → 343
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

  2. XM_005803341.3 → XP_005803398.2  beta-1,4-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A3B5Q277
    Related
    ENSXMAP00000025928.1, ENSXMAT00000041162.1
    Conserved Domains (1) summary
    cd00899
    Location:125 → 343
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids
Nucleotide Protein Strain
Heading Accession and Version

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