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LOC102233977 chondroitin sulfate N-acetylgalactosaminyltransferase 1-like [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102233977, updated on 22-Oct-2023

Summary

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Gene symbol
LOC102233977
Gene description
chondroitin sulfate N-acetylgalactosaminyltransferase 1-like
See related
Ensembl:ENSXMAG00000016212
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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Genomic context

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See LOC102233977 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
10
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 12 NC_036454.1 (14725301..14733696)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372180.1 (4233973..4239533)

Chromosome 12 - NC_036454.1Genomic Context describing neighboring genes Neighboring gene gamma-glutamyl hydrolase-like Neighboring gene ring finger protein 122 Neighboring gene SH2B adaptor protein 3 Neighboring gene PH domain containing endocytic trafficking adaptor 1 Neighboring gene proline rich 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036454.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    14725301..14733696
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005795054.2 → XP_005795111.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1-like

    UniProtKB/TrEMBL
    M4AP50
    Related
    ENSXMAP00000016245.1, ENSXMAT00000016269.2
    Conserved Domains (1) summary
    cl11394
    Location:141 → 512
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases