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LOC102233570 N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2-like [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102233570, updated on 22-Oct-2023

Summary

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Gene symbol
LOC102233570
Gene description
N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2-like
See related
Ensembl:ENSXMAG00000019813
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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Genomic context

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See LOC102233570 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 5 NC_036447.1 (7604789..7614227)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372196.1 (755982..758031)

Chromosome 5 - NC_036447.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111608603 Neighboring gene copper metabolism (Murr1) domain containing 1 Neighboring gene uncharacterized LOC102226733 Neighboring gene homeobox protein OTX1 B-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036447.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    7604789..7614227
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005797473.3 → XP_005797530.1  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2-like

    UniProtKB/TrEMBL
    M4AZG5
    Related
    ENSXMAP00000019860.1, ENSXMAT00000019888.2
    Conserved Domains (1) summary
    cl21608
    Location:158 → 353
    Galactosyl_T; Galactosyltransferase

  2. XM_023333552.1 → XP_023189320.1  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2-like

    UniProtKB/TrEMBL
    M4AZG5
    Conserved Domains (1) summary
    cl21608
    Location:158 → 353
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases