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tmtc1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102232420, updated on 10-Mar-2024

Summary

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Gene symbol
tmtc1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
See related
Ensembl:ENSXMAG00000027970
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See tmtc1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
20
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 17 NC_036459.1 (19984957..20113564, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005375039.1 (3887..9270, complement)

Chromosome 17 - NC_036459.1Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase subunit A5 Neighboring gene component of oligomeric golgi complex 5 Neighboring gene probable G-protein coupled receptor 22 Neighboring gene importin 8 Neighboring gene transmembrane protein 178Bb

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 1
Names
transmembrane and tetratricopeptide repeat containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036459.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    19984957..20113564 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023349870.1 → XP_023205638.1  transmembrane and TPR repeat-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3B5QPU1
    Related
    ENSXMAP00000033434.1, ENSXMAT00000037095.1
    Conserved Domains (3) summary
    sd00006
    Location:474 → 502
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:283 → 356
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:460 → 864
    TPR_11; TPR repeat

  2. XM_023349873.1 → XP_023205641.1  transmembrane and TPR repeat-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A3B5QPU1
    Conserved Domains (3) summary
    sd00006
    Location:322 → 350
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:131 → 204
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:308 → 712
    TPR_11; TPR repeat

  3. XM_023349871.1 → XP_023205639.1  transmembrane and TPR repeat-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3B5QPU1
    Conserved Domains (3) summary
    sd00006
    Location:474 → 502
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:283 → 356
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:460 → 816
    TPR_11; TPR repeat

  4. XM_023349872.1 → XP_023205640.1  transmembrane and TPR repeat-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3B5QPU1
    Conserved Domains (3) summary
    sd00006
    Location:474 → 502
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:283 → 356
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:460 → 807
    TPR_11; TPR repeat
Nucleotide Protein Strain
Heading Accession and Version

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