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myo1b myosin IB [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102231648, updated on 10-Mar-2024

Summary

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Gene symbol
myo1b
Gene description
myosin IB
See related
Ensembl:ENSXMAG00000016513
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See myo1b in Genome Data Viewer
Location:
chromosome: 7
Exon count:
33
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 7 NC_036449.1 (24059456..24129393)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005373310.1 (5356..36991)

Chromosome 7 - NC_036449.1Genomic Context describing neighboring genes Neighboring gene low density lipoprotein receptor-related protein 1Bb Neighboring gene basic leucine zipper and W2 domain-containing protein 1-A-like Neighboring gene uncharacterized LOC111609219 Neighboring gene motor neuron and pancreas homeobox protein 1-like Neighboring gene cilia and flagella associated protein 65

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microfilament motor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle transport along actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in brush border IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microvillus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of myosin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
unconventional myosin-Ib

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036449.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    24059456..24129393
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023336390.1 → XP_023192158.1  unconventional myosin-Ib isoform X1

    UniProtKB/TrEMBL
    A0A3B5QR98
    Conserved Domains (2) summary
    cd01378
    Location:26 → 687
    MYSc_Myo1; class I myosin, motor domain
    pfam06017
    Location:969 → 1164
    Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding

  2. XM_023336392.1 → XP_023192160.1  unconventional myosin-Ib isoform X3

    UniProtKB/TrEMBL
    A0A3B5QR98
    Conserved Domains (2) summary
    cd01378
    Location:26 → 687
    MYSc_Myo1; class I myosin, motor domain
    pfam06017
    Location:911 → 1106
    Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding

  3. XM_023336394.1 → XP_023192162.1  unconventional myosin-Ib isoform X5

    UniProtKB/TrEMBL
    A0A3B5PU45
    Conserved Domains (2) summary
    cd01378
    Location:26 → 687
    MYSc_Myo1; class I myosin, motor domain
    pfam06017
    Location:882 → 1077
    Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding

  4. XM_023336391.1 → XP_023192159.1  unconventional myosin-Ib isoform X2

    UniProtKB/TrEMBL
    A0A3B5QR98, M4AQ39
    Related
    ENSXMAP00000016584.2, ENSXMAT00000016608.2
    Conserved Domains (2) summary
    cd01378
    Location:26 → 685
    MYSc_Myo1; class I myosin, motor domain
    pfam06017
    Location:967 → 1162
    Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding

  5. XM_023336393.1 → XP_023192161.1  unconventional myosin-Ib isoform X4

    UniProtKB/TrEMBL
    A0A3B5QR98
    Conserved Domains (2) summary
    cd01378
    Location:26 → 685
    MYSc_Myo1; class I myosin, motor domain
    pfam06017
    Location:909 → 1104
    Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding

  6. XM_023336395.1 → XP_023192163.1  unconventional myosin-Ib isoform X6

    UniProtKB/TrEMBL
    A0A3B5PU45
    Related
    ENSXMAP00000021156.1, ENSXMAT00000027826.1
    Conserved Domains (2) summary
    cd01378
    Location:26 → 685
    MYSc_Myo1; class I myosin, motor domain
    pfam06017
    Location:880 → 1075
    Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding
Nucleotide Protein Strain
Heading Accession and Version

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