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galnt13 polypeptide N-acetylgalactosaminyltransferase 13 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102230392, updated on 18-Aug-2024

Summary

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Gene symbol
galnt13
Gene description
polypeptide N-acetylgalactosaminyltransferase 13
See related
Ensembl:ENSXMAG00000011252
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See galnt13 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
16
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 7 NC_036449.1 (18678394..18718990, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372315.1 (28619..59947)

Chromosome 7 - NC_036449.1Genomic Context describing neighboring genes Neighboring gene nuclear receptor subfamily 4, group A, member 2a Neighboring gene potassium inwardly rectifying channel subfamily J member 3a Neighboring gene reprimo, TP53 dependent G2 arrest mediator candidate a Neighboring gene PRP40 pre-mRNA processing factor 40 homolog A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 13
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036449.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    18678394..18718990 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023337601.1 → XP_023193369.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X3

    UniProtKB/TrEMBL
    A0A3B5QG78
    Related
    ENSXMAP00000029923.1, ENSXMAT00000029634.1
    Conserved Domains (2) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:431 → 547
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_023337599.1 → XP_023193367.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X1

    UniProtKB/TrEMBL
    A0A3B5Q7P3, M4A9Z8
    Related
    ENSXMAP00000011292.2, ENSXMAT00000011306.2
    Conserved Domains (2) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:431 → 558
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_023337600.1 → XP_023193368.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X2

    UniProtKB/TrEMBL
    A0A3B5PV33, A0A3B5Q7P3
    Related
    ENSXMAP00000022760.1, ENSXMAT00000041515.1
    Conserved Domains (2) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:431 → 548
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  4. XM_023337598.1 → XP_023193366.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X1

    UniProtKB/TrEMBL
    A0A3B5Q7P3, M4A9Z8
    Conserved Domains (2) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:431 → 558
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein Strain
Heading Accession and Version

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