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dqx1 DEAQ box RNA-dependent ATPase 1 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102230163, updated on 10-Mar-2024

Summary

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Gene symbol
dqx1
Gene description
DEAQ box RNA-dependent ATPase 1
See related
Ensembl:ENSXMAG00000010692
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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See dqx1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 8 NC_036450.1 (1200378..1209572, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372820.1 (40161..48758)

Chromosome 8 - NC_036450.1Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase Smyd1 Neighboring gene sepiapterin reductase a Neighboring gene threonine synthase-like 2 Neighboring gene uncharacterized LOC102229642

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DQX1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036450.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    1200378..1209572 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023338304.1 → XP_023194072.1  ATP-dependent RNA helicase DQX1 isoform X1

    UniProtKB/TrEMBL
    A0A3B5R3E4, M4A8D2
    Related
    ENSXMAP00000010726.2, ENSXMAT00000010740.2
    Conserved Domains (2) summary
    COG1643
    Location:103 → 703
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    pfam07717
    Location:663 → 783
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold

  2. XM_023338305.1 → XP_023194073.1  ATP-dependent RNA helicase DQX1 isoform X2

    UniProtKB/TrEMBL
    A0A3B5R3E4
    Related
    ENSXMAP00000036841.1, ENSXMAT00000038380.1
    Conserved Domains (2) summary
    COG1643
    Location:46 → 646
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    pfam07717
    Location:606 → 726
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
Nucleotide Protein Strain
Heading Accession and Version

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