U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

upf2 UPF2 regulator of nonsense mediated mRNA decay [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102229634, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
upf2
Gene description
UPF2 regulator of nonsense mediated mRNA decay
See related
Ensembl:ENSXMAG00000017209
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See upf2 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
23
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 17 NC_036459.1 (597647..620234, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372536.1 (150104..173803, complement)

Chromosome 17 - NC_036459.1Genomic Context describing neighboring genes Neighboring gene RAB3A interacting protein (rabin3) Neighboring gene proline and serine-rich protein 2-like Neighboring gene uncharacterized LOC111611876 Neighboring gene solute carrier family 35 member E3 Neighboring gene nucleoporin 107

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of exon-exon junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
regulator of nonsense transcripts 2
Names
UPF2 regulator of nonsense transcripts homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036459.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    597647..620234 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005811184.3 → XP_005811241.1  regulator of nonsense transcripts 2 isoform X1

    See identical proteins and their annotated locations for XP_005811241.1

    UniProtKB/TrEMBL
    A0A3B5PUU1
    Related
    ENSXMAP00000038091.1, ENSXMAT00000036815.1
    Conserved Domains (3) summary
    smart00543
    Location:569 → 756
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam02854
    Location:774 → 984
    MIF4G; MIF4G domain
    pfam04050
    Location:1096 → 1221
    Upf2; Up-frameshift suppressor 2

  2. XM_023350263.1 → XP_023206031.1  regulator of nonsense transcripts 2 isoform X1

    UniProtKB/TrEMBL
    A0A3B5PUU1
    Related
    ENSXMAP00000022665.1, ENSXMAT00000023446.1
    Conserved Domains (3) summary
    smart00543
    Location:569 → 756
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam02854
    Location:774 → 984
    MIF4G; MIF4G domain
    pfam04050
    Location:1096 → 1221
    Upf2; Up-frameshift suppressor 2

  3. XM_014473367.2 → XP_014328853.1  regulator of nonsense transcripts 2 isoform X2

    UniProtKB/TrEMBL
    M4AS28
    Related
    ENSXMAP00000017273.2, ENSXMAT00000017297.2
    Conserved Domains (3) summary
    smart00543
    Location:569 → 756
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam02854
    Location:774 → 984
    MIF4G; MIF4G domain
    pfam04050
    Location:1096 → 1221
    Upf2; Up-frameshift suppressor 2
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.