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pomgnt1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102228473, updated on 10-Mar-2024

Summary

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Gene symbol
pomgnt1
Gene description
protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)
See related
Ensembl:ENSXMAG00000005621
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See pomgnt1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
24
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 9 NC_036451.1 (30728741..30747654, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372401.1 (893126..915537, complement)

Chromosome 9 - NC_036451.1Genomic Context describing neighboring genes Neighboring gene phosphoinositide-3-kinase, regulatory subunit 3b (gamma) Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene tetraspanin-1-like Neighboring gene interferon-induced protein with tetratricopeptide repeats 1-like Neighboring gene interferon-induced protein with tetratricopeptide repeats 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036451.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    30728741..30747654 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023338979.1 → XP_023194747.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A3B5R9C2, M3ZTW7
    Related
    ENSXMAP00000040318.1, ENSXMAT00000028322.1
    Conserved Domains (2) summary
    cd02514
    Location:295 → 622
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
    cd13937
    Location:93 → 240
    PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases

RNA

  1. XR_002753229.1 RNA Sequence

  2. XR_002753228.1 RNA Sequence

  3. XR_002753227.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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