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snd1 staphylococcal nuclease and tudor domain containing 1 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102228216, updated on 10-Mar-2024

Summary

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Gene symbol
snd1
Gene description
staphylococcal nuclease and tudor domain containing 1
See related
Ensembl:ENSXMAG00000011469
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See snd1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
24
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 17 NC_036459.1 (3393866..3582682, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372327.1 (1144563..1304847)

Chromosome 17 - NC_036459.1Genomic Context describing neighboring genes Neighboring gene SH3 and multiple ankyrin repeat domains protein 3-like Neighboring gene thymidine phosphorylase-like Neighboring gene leucine rich repeat containing 4.1 Neighboring gene paired box 4 Neighboring gene hepatocyte growth factor a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulatory ncRNA-mediated gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RISC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
staphylococcal nuclease domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036459.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    3393866..3582682 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023350655.1 → XP_023206423.1  staphylococcal nuclease domain-containing protein 1

    UniProtKB/TrEMBL
    M4AAS0
    Related
    ENSXMAP00000011564.2, ENSXMAT00000011578.2
    Conserved Domains (4) summary
    smart00318
    Location:193 → 328
    SNc; Staphylococcal nuclease homologues
    cd00175
    Location:350 → 497
    SNc; Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
    cl29560
    Location:841 → 904
    SNc; Staphylococcal nuclease homologues
    cd20433
    Location:704 → 786
    Tudor_TDRD11; Tudor domain found in Tudor domain-containing protein 11 (TDRD11) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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