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LOC102227660 troponin I, fast skeletal muscle-like [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102227660, updated on 22-Oct-2023

Summary

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Gene symbol
LOC102227660
Gene description
troponin I, fast skeletal muscle-like
See related
Ensembl:ENSXMAG00000013409
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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Genomic context

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See LOC102227660 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 2 NC_036444.1 (30149134..30173148)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005375585.1 (2475..7273)

Chromosome 2 - NC_036444.1Genomic Context describing neighboring genes Neighboring gene synaptotagmin VIII Neighboring gene dual specificity protein phosphatase MPK-4-like Neighboring gene troponin I, fast skeletal muscle-like Neighboring gene troponin I, fast skeletal muscle-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of troponin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
troponin I, fast skeletal muscle-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036444.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    30149134..30173148
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023348303.1 → XP_023204071.1  troponin I, fast skeletal muscle-like

    UniProtKB/TrEMBL
    M4AG40
    Related
    ENSXMAP00000013434.2, ENSXMAT00000013450.2
    Conserved Domains (1) summary
    pfam00992
    Location:12 → 142
    Troponin

  2. XM_023348311.1 → XP_023204079.1  troponin I, fast skeletal muscle-like

    UniProtKB/TrEMBL
    M4AG40
    Conserved Domains (1) summary
    pfam00992
    Location:12 → 142
    Troponin
Nucleotide Protein Strain
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Molecular Biology Databases