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piwil2 piwi-like RNA-mediated gene silencing 2 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102227308, updated on 10-Mar-2024

Summary

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Gene symbol
piwil2
Gene description
piwi-like RNA-mediated gene silencing 2
See related
Ensembl:ENSXMAG00000005034
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See piwil2 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
27
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 12 NC_036454.1 (27319464..27338337, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372983.1 (26305..40244, complement)

Chromosome 12 - NC_036454.1Genomic Context describing neighboring genes Neighboring gene purpurin-like Neighboring gene tankyrase-1 Neighboring gene alpha-L-iduronidase Neighboring gene 5-hydroxytryptamine (serotonin) receptor 7c Neighboring gene ATPase family AAA domain containing 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables piRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulatory ncRNA-mediated gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
piwi-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036454.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    27319464..27338337 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023343297.1 → XP_023199065.1  piwi-like protein 2

    UniProtKB/TrEMBL
    M3ZS69
    Related
    ENSXMAP00000027994.1, ENSXMAT00000032928.1
    Conserved Domains (2) summary
    smart00949
    Location:468 → 607
    PAZ; This domain is named PAZ after the proteins Piwi Argonaut and Zwille
    cd04658
    Location:593 → 1037
    Piwi_piwi-like_Euk; Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of ...

  2. XM_023343296.1 → XP_023199064.1  piwi-like protein 2

    UniProtKB/TrEMBL
    M3ZS69
    Conserved Domains (2) summary
    smart00949
    Location:468 → 607
    PAZ; This domain is named PAZ after the proteins Piwi Argonaut and Zwille
    cd04658
    Location:593 → 1037
    Piwi_piwi-like_Euk; Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of ...

  3. XM_014474665.2 → XP_014330151.1  piwi-like protein 2

    UniProtKB/TrEMBL
    M3ZS69
    Related
    ENSXMAP00000005062.2, ENSXMAT00000005067.2
    Conserved Domains (2) summary
    smart00949
    Location:468 → 607
    PAZ; This domain is named PAZ after the proteins Piwi Argonaut and Zwille
    cd04658
    Location:593 → 1037
    Piwi_piwi-like_Euk; Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of ...
Nucleotide Protein Strain
Heading Accession and Version

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