U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

chd5 chromodomain helicase DNA binding protein 5 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102225764, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
chd5
Gene description
chromodomain helicase DNA binding protein 5
See related
Ensembl:ENSXMAG00000014686
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See chd5 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
40
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 20 NC_036462.1 (10097877..10143473, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372882.1 (34018..79122, complement)

Chromosome 20 - NC_036462.1Genomic Context describing neighboring genes Neighboring gene immunoglobin superfamily, member 21a Neighboring gene uncharacterized LOC111605857 Neighboring gene Rho guanine nucleotide exchange factor (GEF) 10-like a Neighboring gene ring finger protein 207a Neighboring gene ribosomal protein L22 Neighboring gene ZPR1 zinc finger

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of NuRD complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
chromodomain-helicase-DNA-binding protein 5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036462.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    10097877..10143473 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023325309.1 → XP_023181077.1  chromodomain-helicase-DNA-binding protein 5 isoform X2

    UniProtKB/TrEMBL
    M4AJS6
    Conserved Domains (9) summary
    smart00298
    Location:607 → 659
    CHROMO; Chromatin organization modifier domain
    cd15531
    Location:359 → 401
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:431 → 473
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    pfam06461
    Location:1361 → 1501
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:1289 → 1339
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08073
    Location:167 → 217
    CHDNT; CHDNT (NUC034) domain
    pfam08074
    Location:1729 → 1899
    CHDCT2; CHDCT2 (NUC038) domain
    cl25758
    Location:1523 → 1690
    DUF4775; Domain of unknown function (DUF4775)
    cl26465
    Location:702 → 1214
    SNF2_N; SNF2 family N-terminal domain

  2. XM_023325308.1 → XP_023181076.1  chromodomain-helicase-DNA-binding protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A3B5QWN8, M4AJS6
    Related
    ENSXMAP00000035619.1, ENSXMAT00000035519.1
    Conserved Domains (9) summary
    smart00298
    Location:607 → 659
    CHROMO; Chromatin organization modifier domain
    cd15531
    Location:359 → 401
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:431 → 473
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    pfam06461
    Location:1368 → 1508
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:1289 → 1339
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08073
    Location:167 → 217
    CHDNT; CHDNT (NUC034) domain
    pfam08074
    Location:1736 → 1906
    CHDCT2; CHDCT2 (NUC038) domain
    cl25758
    Location:1530 → 1697
    DUF4775; Domain of unknown function (DUF4775)
    cl26465
    Location:702 → 1214
    SNF2_N; SNF2 family N-terminal domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.