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hs6st1a heparan sulfate 6-O-sulfotransferase 1a [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102225263, updated on 10-Mar-2024

Summary

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Gene symbol
hs6st1a
Gene description
heparan sulfate 6-O-sulfotransferase 1a
See related
Ensembl:ENSXMAG00000009977
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Also known as
hs6st1
Orthologs
zebrafish all
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Genomic context

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See hs6st1a in Genome Data Viewer
Location:
chromosome: 19
Exon count:
4
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 19 NC_036461.1 (17040579..17104850, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372204.1 (2274728..2336723, complement)

Chromosome 19 - NC_036461.1Genomic Context describing neighboring genes Neighboring gene transcription factor Sp3-like Neighboring gene UDP-glucose glycoprotein glucosyltransferase 1 Neighboring gene otolith matrix protein Neighboring gene activin A receptor, type 1 like Neighboring gene D-2-hydroxyglutarate dehydrogenase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 1
Names
heparan sulfate 6-O-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036461.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    17040579..17104850 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005798385.3 → XP_005798442.1  heparan-sulfate 6-O-sulfotransferase 1

    UniProtKB/TrEMBL
    A0A3B5QAU6, M4A693
    Related
    ENSXMAP00000027296.1, ENSXMAT00000026074.1
    Conserved Domains (1) summary
    pfam03567
    Location:77 → 341
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein Strain
Heading Accession and Version

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