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eif2d eukaryotic translation initiation factor 2D [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102225059, updated on 10-Mar-2024

Summary

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Gene symbol
eif2d
Gene description
eukaryotic translation initiation factor 2D
See related
Ensembl:ENSXMAG00000014696
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See eif2d in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 1 NC_036443.1 (20229738..20235420, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005373144.1 (41965..47479)

Chromosome 1 - NC_036443.1Genomic Context describing neighboring genes Neighboring gene colony stimulating factor 1b (macrophage) Neighboring gene fibromodulin b Neighboring gene solute carrier family 12 member 5b Neighboring gene RNA binding motif protein 39b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in formation of translation preinitiation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
eukaryotic translation initiation factor 2D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036443.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    20229738..20235420 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023338686.1 → XP_023194454.1  eukaryotic translation initiation factor 2D isoform X2

    UniProtKB/TrEMBL
    M4AJU8
    Related
    ENSXMAP00000014742.2, ENSXMAT00000014762.2
    Conserved Domains (3) summary
    cd11608
    Location:502 → 586
    eIF2D_C; C-terminal domain of eIF2D and related proteins
    cd11610
    Location:6 → 81
    eIF2D_N; N-terminal domain of eIF2D and related proteins
    cl25957
    Location:7 → 179
    Tma20; Predicted ribosome-associated RNA-binding protein Tma20, contains PUA domain [Translation, ribosomal structure and biogenesis]

  2. XM_023338640.1 → XP_023194408.1  eukaryotic translation initiation factor 2D isoform X1

    UniProtKB/TrEMBL
    M4AJU8
    Conserved Domains (3) summary
    cd11608
    Location:503 → 587
    eIF2D_C; C-terminal domain of eIF2D and related proteins
    cd11610
    Location:6 → 81
    eIF2D_N; N-terminal domain of eIF2D and related proteins
    cl25957
    Location:7 → 179
    Tma20; Predicted ribosome-associated RNA-binding protein Tma20, contains PUA domain [Translation, ribosomal structure and biogenesis]
Nucleotide Protein Strain
Heading Accession and Version

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