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tpm4a tropomyosin 4a [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102224849, updated on 10-Mar-2024

Summary

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Gene symbol
tpm4a
Gene description
tropomyosin 4a
See related
Ensembl:ENSXMAG00000003376
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Also known as
tpm4
Orthologs
human zebrafish all
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Genomic context

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See tpm4a in Genome Data Viewer
Location:
chromosome: 9
Exon count:
11
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 9 NC_036451.1 (16236482..16264098, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372340.1 (929268..960167, complement)

Chromosome 9 - NC_036451.1Genomic Context describing neighboring genes Neighboring gene hematopoietic SH2 domain containing Neighboring gene 40S ribosomal protein S27-like Neighboring gene RAB8A, member RAS oncogene family Neighboring gene disintegrin and metalloproteinase domain-containing protein 10-like Neighboring gene zinc finger protein OZF-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tropomyosin alpha-4 chain
Names
tropomyosin 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036451.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    16236482..16264098 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005806375.3 → XP_005806432.1  tropomyosin alpha-4 chain isoform X1

    UniProtKB/TrEMBL
    M3ZMF1
    Related
    ENSXMAP00000003394.1, ENSXMAT00000003399.2
    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  2. XM_005806376.3 → XP_005806433.1  tropomyosin alpha-4 chain isoform X3

    UniProtKB/TrEMBL
    A0A3B5RE57
    Related
    ENSXMAP00000041435.1, ENSXMAT00000033307.1
    Conserved Domains (1) summary
    pfam00261
    Location:12 → 246
    Tropomyosin

  3. XM_005806374.3 → XP_005806431.1  tropomyosin alpha-4 chain isoform X2

    UniProtKB/TrEMBL
    A0A3B5R8D8
    Related
    ENSXMAP00000039837.1, ENSXMAT00000038289.1
    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  4. XM_005806377.3 → XP_005806434.1  tropomyosin alpha-4 chain isoform X4

    Conserved Domains (1) summary
    pfam00261
    Location:12 → 246
    Tropomyosin
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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