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eif4a2 eukaryotic translation initiation factor 4A2 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102224743, updated on 10-Mar-2024

Summary

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Gene symbol
eif4a2
Gene description
eukaryotic translation initiation factor 4A2
See related
Ensembl:ENSXMAG00000004590
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See eif4a2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 6 NC_036448.1 (3608971..3616239)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372255.1 (1268079..1275311)

Chromosome 6 - NC_036448.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain 39 molecular ruler complex subunit Neighboring gene DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae) Neighboring gene SET domain containing 9 Neighboring gene small nucleolar RNA SNORD2 Neighboring gene small nucleolar RNA SNORD2 Neighboring gene small nucleolar RNA SNORA81 Neighboring gene small nucleolar RNA SNORA81 Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5b Neighboring gene F-box-like/WD repeat-containing protein TBL1XR1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
eukaryotic initiation factor 4A-II
Names
eukaryotic translation initiation factor 4A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036448.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    3608971..3616239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005802380.2 → XP_005802437.1  eukaryotic initiation factor 4A-II isoform X1

    See identical proteins and their annotated locations for XP_005802437.1

    UniProtKB/TrEMBL
    M3ZQX1
    Related
    ENSXMAP00000004614.1, ENSXMAT00000004619.2
    Conserved Domains (1) summary
    PTZ00424
    Location:25 → 411
    PTZ00424; helicase 45; Provisional

  2. XM_023334989.1 → XP_023190757.1  eukaryotic initiation factor 4A-II isoform X2

    Conserved Domains (1) summary
    PTZ00424
    Location:17 → 333
    PTZ00424; helicase 45; Provisional
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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