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aqr aquarius intron-binding spliceosomal factor [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102222934, updated on 10-Mar-2024

Summary

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Gene symbol
aqr
Gene description
aquarius intron-binding spliceosomal factor
See related
Ensembl:ENSXMAG00000009596
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See aqr in Genome Data Viewer
Location:
chromosome: 19
Exon count:
36
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 19 NC_036461.1 (16139077..16185273)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372204.1 (1416876..1462916)

Chromosome 19 - NC_036461.1Genomic Context describing neighboring genes Neighboring gene CDAN1 interacting nuclease 1 Neighboring gene diphthamine biosynthesis 6 Neighboring gene uncharacterized LOC111612168 Neighboring gene actin alpha cardiac muscle 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intron-binding protein aquarius

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036461.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    16139077..16185273
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023353139.1 → XP_023208907.1  intron-binding protein aquarius

    UniProtKB/TrEMBL
    M4A590
    Related
    ENSXMAP00000009634.2, ENSXMAT00000009648.2
    Conserved Domains (2) summary
    COG1112
    Location:827 → 1316
    DNA2; Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]
    pfam16399
    Location:21 → 806
    Aquarius_N; Intron-binding protein aquarius N-terminus
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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