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slc25a20 solute carrier family 25 member 20 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102222194, updated on 22-Oct-2023

Summary

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Gene symbol
slc25a20
Gene description
solute carrier family 25 member 20
See related
Ensembl:ENSXMAG00000016764 Ensembl:ENSXMAG00000016779
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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Genomic context

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See slc25a20 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
22
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 20 NC_036462.1 (18360777..18380215)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372364.1 (183897..190988, complement)

Chromosome 20 - NC_036462.1Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor Neighboring gene NCK interacting protein with SH3 domain Neighboring gene msx2-interacting protein-like Neighboring gene filamin binding LIM protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyl carnitine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cAMP-dependent protein kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cAMP-dependent protein kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrial envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial carnitine/acylcarnitine carrier protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036462.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    18360777..18380215
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023324993.1 → XP_023180761.1  mitochondrial carnitine/acylcarnitine carrier protein isoform X3

    Conserved Domains (3) summary
    cd12103
    Location:206 → 246
    DD_RIIalpha_PKA; Dimerization/Docking domain of the Type II alpha Regulatory subunit of cAMP-dependent protein kinase
    cd00038
    Location:460 → 580
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    pfam00153
    Location:108 → 198
    Mito_carr; Mitochondrial carrier protein

  2. XM_005807278.3 → XP_005807335.1  mitochondrial carnitine/acylcarnitine carrier protein isoform X2

    UniProtKB/TrEMBL
    M4AQT6
    Related
    ENSXMAP00000016831.1, ENSXMAT00000016855.2
    Conserved Domains (1) summary
    pfam00153
    Location:108 → 198
    Mito_carr; Mitochondrial carrier protein

  3. XM_023324991.1 → XP_023180759.1  mitochondrial carnitine/acylcarnitine carrier protein isoform X2

    UniProtKB/TrEMBL
    M4AQT6
    Conserved Domains (1) summary
    pfam00153
    Location:108 → 198
    Mito_carr; Mitochondrial carrier protein

  4. XM_023324990.1 → XP_023180758.1  mitochondrial carnitine/acylcarnitine carrier protein isoform X1

    UniProtKB/TrEMBL
    M4AQR2
    Related
    ENSXMAP00000016807.2, ENSXMAT00000016831.2
    Conserved Domains (2) summary
    cd12103
    Location:4 → 44
    DD_RIIalpha_PKA; Dimerization/Docking domain of the Type II alpha Regulatory subunit of cAMP-dependent protein kinase
    cd00038
    Location:258 → 378
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  5. XM_023324988.1 → XP_023180756.1  mitochondrial carnitine/acylcarnitine carrier protein isoform X1

    UniProtKB/TrEMBL
    M4AQR2
    Conserved Domains (2) summary
    cd12103
    Location:4 → 44
    DD_RIIalpha_PKA; Dimerization/Docking domain of the Type II alpha Regulatory subunit of cAMP-dependent protein kinase
    cd00038
    Location:258 → 378
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  6. XM_023324989.1 → XP_023180757.1  mitochondrial carnitine/acylcarnitine carrier protein isoform X1

    UniProtKB/TrEMBL
    M4AQR2
    Conserved Domains (2) summary
    cd12103
    Location:4 → 44
    DD_RIIalpha_PKA; Dimerization/Docking domain of the Type II alpha Regulatory subunit of cAMP-dependent protein kinase
    cd00038
    Location:258 → 378
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
Nucleotide Protein Strain
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