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LOC102222093 polypeptide N-acetylgalactosaminyltransferase 6-like [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102222093, updated on 22-Oct-2023

Summary

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Gene symbol
LOC102222093
Gene description
polypeptide N-acetylgalactosaminyltransferase 6-like
See related
Ensembl:ENSXMAG00000017275
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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Genomic context

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See LOC102222093 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 1 NC_036443.1 (22378771..22387627)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372245.1 (1895629..1903260, complement)

Chromosome 1 - NC_036443.1Genomic Context describing neighboring genes Neighboring gene adenylate cyclase 6 Neighboring gene testis-expressed protein 49-like Neighboring gene glucose-6-phosphate dehydrogenase Neighboring gene glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036443.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    22378771..22387627
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023345104.1 → XP_023200872.1  polypeptide N-acetylgalactosaminyltransferase 6-like isoform X2

    Conserved Domains (2) summary
    cd02510
    Location:56 → 361
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:399 → 494
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_023345080.1 → XP_023200848.1  polypeptide N-acetylgalactosaminyltransferase 6-like isoform X1

    UniProtKB/TrEMBL
    M4AS72
    Related
    ENSXMAP00000017317.1, ENSXMAT00000017341.2
    Conserved Domains (2) summary
    cd02510
    Location:159 → 464
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:502 → 597
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein Strain
Heading Accession and Version

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