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LOC102220874 homeobox protein OTX2-like [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102220874, updated on 22-Oct-2023

Summary

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Gene symbol
LOC102220874
Gene description
homeobox protein OTX2-like
See related
Ensembl:ENSXMAG00000008382
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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Genomic context

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See LOC102220874 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
4
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 15 NC_036457.1 (16008621..16014819, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372321.1 (620272..625703, complement)

Chromosome 15 - NC_036457.1Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor 6a Neighboring gene E3 ubiquitin-protein ligase pellino homolog 2-like Neighboring gene N-alpha-acetyltransferase 30, NatC catalytic subunit Neighboring gene armadillo like helical domain containing 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein OTX2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036457.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    16008621..16014819 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005805615.2 → XP_005805672.1  homeobox protein OTX2-like

    UniProtKB/TrEMBL
    M4A1R2
    Related
    ENSXMAP00000008406.1, ENSXMAT00000008417.2
    Conserved Domains (2) summary
    pfam00046
    Location:42 → 94
    Homeobox; Homeobox domain
    pfam03529
    Location:166 → 245
    TF_Otx; Otx1 transcription factor
Nucleotide Protein Strain
Heading Accession and Version

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